configure: error: "libxml not found"

You signed in with another tab or window. /tmp/RtmpY66UhU/downloaded_packages checking for gzopen in -lz yes rev2023.4.21.43403. -- Looking for strerror_r - found Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? checking for gcc gcc Why does contour plot not show point(s) where function has a discontinuity? error: Don't move past current position; error: Limit number of parser errors; parser: Lower entity nesting limit with XML_PARSE_HUGE; parser: Don't increase depth twice when parsing internal entities; parser: Improve detection of entity loops; parser: Only report a single entity error; libxml.h: Remove dubious definition of LIBXML_STATIC Trying to install the XML package as follows I get the error configure: error: "libxml not found". How a top-ranked engineering school reimagined CS curriculum (Ep. To learn more, see our tips on writing great answers. That will install the build dependencies for the btrfs-tools version in your package repository, rather than for the newer version you're trying to build. has been greatly improved. Did the drapes in old theatres actually say "ASBESTOS" on them? Have you tried doing the same command after rebooting your pc ? Thanks for contributing an answer to Stack Overflow! Warning message: from /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/xml.c:23: If total energies differ across different software, how do I decide which software to use? [ 16%] Building C object CMakeFiles/iio.dir/utilities.c.o The problem in this case is the configure script incorrectly judges you to be using libxml 1 from parsing the include directory. CMake Warning at bindings/python/CMakeLists.txt:4 (find_package): Not the answer you're looking for? density matrix, Literature about the category of finitary monads. checking for pkg-config /usr/bin/pkg-config make[1]: *** [CMakeFiles/iio.dir/all] Error 2 In file included from /usr/include/libxml2/libxml/parser.h:810:0, So how can i add libxml-2.0.pc in /usr/lib/pkgconfig/. Notify me of followup comments via e-mail. [ 19%] Building C object CMakeFiles/iio.dir/buffer.c.o If "Python" Why do men's bikes have high bars where you can hit your testicles while women's bikes have the bar much lower? [ 30%] Building C object CMakeFiles/iio.dir/sort.c.o I have tried upgrading to 16.x but the upgrade process fails with errors need to zoom in into that another time. Downloaded the latest stable version of php ie, 5.5.7 and started to compile. ERROR: configuration failed for package XML Ah, so you're using Anaconda's R distribution. Also: shouldn't not finding libxml already throw an error in cmake? * removing /home/kkarius/anaconda3/lib/R/library/XML, The downloaded source packages are in sequential (one-line) endnotes in plain tex/optex. [ 38%] Building C object CMakeFiles/iio.dir/network.c.o It only takes a minute to sign up. How a top-ranked engineering school reimagined CS curriculum (Ep. Would you ever say "eat pig" instead of "eat pork"? So, any idea where the bug is? Futuristic/dystopian short story about a man living in a hive society trying to meet his dying mother. -- Found BISON: /usr/bin/bison (found version "3.0.4") Have a question about this project? means no "/usr/lib/pkgconfig/libxml-2.0.pc", usually found in the libxml2 development files. How can I fix this? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Working PATH (for me): /usr/local/sbin:/usr/local/bin:/usr/bin:/var/lib/flatpak/exports/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl. -- Found Git: /usr/bin/git (found version "2.17.1") Is there a generic term for these trajectories? Connect and share knowledge within a single location that is structured and easy to search. headers, it was still possible to declare them manually. configure: error: xml2-config not found. In your case, this is likely possible using: export PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/opt/libxml2/lib/pkgconfig" [2020-01-17 10:10 UTC] 823688826 at qq dot com -Status: Feedback +Status: [2020-01-17 10:10 UTC] 823688826 at qq dot com [1] stats graphics grDevices utils datasets methods base, other attached packages: What is this brick with a round back and a stud on the side used for? Already on GitHub? The header files and library seem to be @ N0rbert - that's really useful information and is helping me progress, thanks. R itself was installed using anaconda. Learn more about Stack Overflow the company, and our products. You can also subscribe without commenting. /usr/local/Cellar/libxml2/2.9.3/lib/pkgconfig and /usr/local/Library/ENV/pkgconfig/. https://stackoverflow.com/questions/45775877/configure-error-please-reinstall-the-libzip-distribution. What positional accuracy (ie, arc seconds) is necessary to view Saturn, Uranus, beyond? no checking for xmlParseFile in -lxml. Could you please promote your comment as an answer so I can mark it as such? [ 8%] Building C object CMakeFiles/iio.dir/device.c.o Here is the diff in case someone else has the same problem, what didn't work, but I also tried: building and installing AUR version libxml2-git as well as installing libxml2-2.9.9-2. Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? -- Looking for in6addr_any As brew tells you when it installs libxml2: This means that brew is not symlinking libxml2 to /usr/local/lib and /usr/local/include, and likely not linking the pkg-config file there as well, which is why libvisio can't find it. -- Performing Test HAS_WPEDANTIC Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? The version nodes are kept so it ** package XML successfully unpacked and MD5 sums checked Can the game be left in an invalid state if all state-based actions are replaced? How about saving the world? So, why would I get "No package 'libxml2.0' found", and how might I fix this? >>Still the configure script stops with this erroe: >>checking for xmlSAXUserParseFile. documents which make heavy use of entities are rejected now. The pgModeler instruction includes "To check if the library is correctly installed" run this command: pkg-config libxml2.0 --cflags --libs checking for gcc gcc Not the answer you're looking for? It doesn't mention the names "LIBXML_CFLAGS" and "LIBXML_LIBS" as far as I can see. I really don't get why it's not building on my systems, my workaround now is to set it to REQUIRED in the CMakeList.txt file, but I honestly have no idea what exactly that changes, it just works now. [CentOS Stream 8]: Unknown repo crb : [Solved], Failed to download metadata for repo AppStream [CentOS], git push using GitHub token [Deprecating password authentication], Book Tatkal tickets fast using Tatkal for Sure App. #include mismatched. R version 3.4.1 (2017-06-30) By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. * edition of libxml Looking for job perks? How to combine several legends in one frame? Well occasionally send you account related emails. A freelance writer on latest trends in technology, gadget reviews, How to's and many more. devtools::install("./XML", What are the advantages of running a power tool on 240 V vs 120 V? Thanks! -- Performing Test WITH_NETWORK_EVENTFD - Success What are the advantages of running a power tool on 240 V vs 120 V? By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. add explicit note about dependency on autotools-archive, resolving Gi, https://nick-black.com/bugzilla/show_bug.cgi?id=543. trying URL 'https://cran.rstudio.com/src/contrib/XML_3.98-1.9.tar.gz' Special thanks to Googles Open Source Security Subsidies program for asked CMake to find a package configuration file provided by "Python", but https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/, https://stackoverflow.com/questions/45775877/configure-error-please-reinstall-the-libzip-distribution. Located parser file /home/***/anaconda3/include/libxml2//parser.h I installed libxml2 with brew and checked a lot of articles, but nothing helped so far. sha256sum: b1a2fca3f7722d6c35a4f24974a1b5800e4d84ec5cb756bc61ef2b8c75a19e36. Browse other questions tagged. Not the answer you're looking for? Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, How did you launch the R shell above? Scanning dependencies of target iio If this is the same problem for you as it was for me, we should report the problem upstream to the XML maintainers. When a gnoll vampire assumes its hyena form, do its HP change? "Signpost" puzzle from Tatham's collection. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. is not working in on the command line for Visual Studio Code on OS X/Mac. Try installing: deb: libxml2-dev (Debian, Ubuntu, etc) rpm: libxml2-devel (Fedora, CentOS, RHEL) csw: libxml2_dev (Solaris) If libxml-2.0 is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. [1] compiler_3.4.1 tools_3.4.1. To learn more, see our tips on writing great answers. How to check for #1 being either `d` or `h` with latex3? ** package XML successfully unpacked and MD5 sums checked [OpenStack Glance]: Failed to contact the endpoint at https://localhost:9292 for discovery. -- Looking for strdup - found Literature about the category of finitary monads. How to automatically extend windows virtual disk size [Openstack], No such file or directory c++ Error [CentOS], How to configure Open vSwitch bridge for OpenStack, Too many connections for neutron-db-manage [MySQL], How to manually install higher version of PIP for Python v2.7, [CentOS 7]: Yum install python-pip | No package python-pip available, [OpenStack noVNC]: Code 400, message Client must support binary or base64 protocol [Solved], [CentOS Stream 8]: Error: Unknown repo epel [Solved]. [root@catest php-5.5.7]# yum install libxml2-devel Policy. -- Check for working C compiler: /usr/bin/cc i.e. I had the same error but libxml2-dev was already installed so that didn't help. Asking for help, clarification, or responding to other answers. ~. Making statements based on opinion; back them up with references or personal experience. Updating HTML index of packages in '.Library' cmake --sysroot=${PWD}/../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. but an incompatible library. I used sudo apt-get install libxml2-dev and it seemed to install ok. This release finally fixes symbol visibility on UNIX systems. Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? By not providing "FindPython.cmake" in CMAKE_MODULE_PATH this project has Can someone explain why this point is giving me 8.3V? to your account. rev2023.4.21.43403. Can someone explain why this point is giving me 8.3V? By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. CMakeFiles/Makefile2:67: recipe for target 'CMakeFiles/iio.dir/all' failed * checking for gzopen in -lz. How do you know the names. Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? Thanks for contributing an answer to Stack Overflow! Thanks for contributing an answer to Stack Overflow! to your account. while building fro source, libiio seems to be unable to find libxml2, at least unter arch linux. (Related homebrew issue: "libxml2 install path".). from /usr/include/libxml2/libxml/threads.h:35, cd build Fix use-after-free in xmlParseContentInternal() (David Kilzer), xmllint: Fix use-after-free with --maxmem, parser: Fix OOB read when formatting error message, entities: Rework entity amplification checks, parser: Fix regression in xmlParserNodeInfo accounting, Fix memory errors in code handling malloc failures, xmlParseStartTag2() contains typo when checking for default definitions for, error: Make sure that error messages are valid UTF-8, xmllint: Validate --maxmem integer option, xmlValidatePopElement() can return invalid value (-1) (David Kilzer), parser: Rework EBCDIC code page detection, parser: Limit name length in xmlParseEncName, parser: Rework shrinking of input buffers, html: Rely on CUR_CHAR to grow the input buffer, parser: Rely on CUR_CHAR/NEXT to grow the input buffer, valid: Make xmlValidateElement non-recursive, html: Fix quadratic behavior in htmlParseTryOrFinish, xmllint: Fix memory leak with --pattern --stream, parser: Stop calling xmlParserInputShrink, xinclude: Fix quadratic behavior in xmlXIncludeLoadTxt, xinclude: Abort immediately if max depth was exceeded, parser: Lower entity nesting limit with XML_PARSE_HUGE, parser: Dont increase depth twice when parsing internal entities, parser: Improve detection of entity loops, parser: Only report a single entity error, libxml.h: Remove dubious definition of LIBXML_STATIC, encoding: Remove unused variable xmlDefaultCharEncodingHandler, parser: Merge misc, prolog and epilog cases in push parser, parser: Fix consumed accounting when switching encodings, html: Fix check for end of comment in push parser, parser: Fix push parser with 1-3 byte initial chunk, parser: Rewrite push parser boundary checks, reader: Switch to xmlParserInputBufferCreateMem, html: Dont escape ASCII chars in href attributes, parser: Dont call xmlSHRINK from push parser, parser: Ignore cdata argument in xmlParseCharData, parser: Rework push parser parser progress checks, io: Fix a few integer overflows in I/O statistics, io: Rework xmlParserInputBufferGrow with encodings, io: Check for memory buffer early in xmlParserInputGrow, parser: Fix error message in xmlParseCommentComplex, Bypass proxy in nanoHTTP for hosts in no_proxy (Markus Jrg), schemas: Fix infinite loop in xmlSchemaCheckElemSubstGroup, xinclude: Remove inefficient refcounting scheme, xmllint: Improve handling of empty XPath node sets, parser: Fix potential memory leak in xmlParseAttValueInternal, error: Dont use initGenericErrorDefaultFunc, xpath: Lower XPath recursion limit on Windows, Make xmlNewSAXParserCtx take a const sax handler, Remove internal macros from parserInternals.h, Move some HTML functions to correct header file, xmllint: Stop calling xmlSAXDefaultVersion, Introduce xmlNewSAXParserCtxt and htmlNewSAXParserCtxt, Dont mess with parser options in htmlParseDocument, Remove useless call to htmlDefaultSAXHandlerInit, Remove htmlDefaultSAXHandler from non-SAX1 build, Dont initialize SAX handler in htmlReadMemory, Fix htmlReadMemory mixing up XML and HTML functions, Dont use default SAX handler to report unrelated errors, Create stream with buffer in xmlNewStringInputStream, xzlib: Fix implicit sign change in xz_open, parser: Simplify calculation of available buffer space, parser: Use size_t when subtracting input buffer pointers, parser: Check for integer overflow when updating checkIndex, xpath: Fix harmless integer overflow in xmlXPathTranslateFunction, regexp: Add sanity check in xmlRegCalloc2, encoding: Cast toupper argument to unsigned char, buf: Fix return value of xmlBufGetInputBase, parser: Remove useless ent->etype test in xmlParseReference, parser: Remove useless ent->children tests in xmlParseReference, xmlexports.h: Disable docs for internal macro XMLPUBLIC, parser: Simplify xmlParseConditionalSections, io: Rearrange code in xmlSwitchInputEncodingInt, warnings: Fix -Wstrict-prototypes warning, warnings: Remove set-but-unused variables, Fix unused variable warning in python/types.c, Dont use sizeof(xmlChar) or sizeof(char), parser: Deprecate more internal functions, parser: Deprecate some parser input functions, parser: Deprecate xmlString*DecodeEntities, threads: Deprecate some internal functions, Generate deprecation warnings for old SAX API, Mark more functions setting globals as deprecated, autoconf: Warn about outdated C compilers, catalog.c: Silence a cast warning on VS 2022 (Luk Tyrychtr), xstc/fixup-tests.py: port to Python 3 (Ross Burton), xstc/fixup-tests.py: unify whitespace (Ross Burton), Remove hacky heuristic from b2dc5675 (Alex Richardson), Avoid creating an out-of-bounds pointer by rewriting a check, Correctly relocate internal pointers after realloc() (Alex Richardson), Visual Studio builds: Allow silencing deprecation warnings (Chun-wei Fan), Visual Studio: Define XML_DEPRECATED (Chun-wei Fan), sources: Silence C4013 warnings on Visual Studio (Chun-wei Fan), python/setup.py.in: Improve Windows import patching (Chun-wei Fan), Fix Windows compiler warnings in python/types.c, Fix libxml_PyFileGet with stdout on macOS, xmlexports.h: Remove LIBXML_FASTCALL optimization, Remove XMLCALL and XMLCDECL macros from public headers, Remove RPM build, Makefile.tests, README.tests, libxml.m4: deprecate AM_PATH_XML2, wrap PKG_CHECK_MODULES instead, libxml.m4: fix -Wstrict-prototypes (Sam James), cmake: Build static library with -DLIBXML_STATIC, autotools: Dont use version script on Windows, autotools: Only add network libraries if HTTP/FTP enabled, python: Dont output missing generators during build, Remove HAVE_WIN32_THREADS configuration flag, Use AM_CFLAGS and AM_LDFLAGS consistently, configure.ac: Remove checks for unused programs, Consolidate simple API modules in configure.ac, Fix dependency resolution in configure.ac, Cleanup distribution settings in Makefile.am, testchar: Add test for memory pull parser with encoding, fuzz: Also test init function of URI fuzzer, gitlab-ci: Enable all integer sanitizers, fuzz: Support variable integer sizes in fuzz data, fuzz: Fix duplicate detection in fuzzEntityRecorder, fuzz: Set filename in xmlFuzzEntityLoader, python/tests/reader2: use absolute paths everywhere (Ross Burton), python/tests/reader2: always exit(1) if a test fails (Ross Burton), testModule: exit if the module cant be opened (Ross Burton), CI: disable modules in gcc:static build (Ross Burton), tests: Check that xmlInitParser doesnt allocate memory, tests: Fix use-after-free in Python tests, gitlab-ci: Make Test-Msvc exit if ctest fails, gitlab-ci: Treat compiler warnings as errors on MSVC, test: Add test for push parser boundaries, gitlab-ci: Upgrade image to Ubuntu 22.10, reenable MSan, xinclude: Dont create result doc for test with errors, gitlab-ci: Allow cast-align warnings from clang, gitlab-ci: Move MSVC test to separate script, gitlab-ci: Consolidate CMake test scripts, gitlab-ci: Only install MinGW autotools if needed, gitlab-ci: Only install cmake MinGW package if needed, Disable fuzzer tests if glob.h wasnt found, html: Fix htmlInitAutoClose documentation, doc: Mention new location of XML catalog as breaking change, doc: Mention potentially breaking changes in NEWS, doc: Remove xmlDllMain from documentation and version script, doc: Document xmllint --nodict and --pedantic, Support comments for global variables in documentation, Dont index anything in DOC_DISABLE sections. #include installation of package XML had non-zero exit status, > sessionInfo() https://nick-black.com/bugzilla/show_bug.cgi?id=543 we had a bug on this uninformative error. You are trying to use a version 2. [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 git clone https://github.com/analogdevicesinc/libiio.git Unexpected uint64 behaviour 0xFFFF'FFFF'FFFF'FFFF - 1 = 0? link errors with --no-undefined-version. As you can see, libxml2 is being found in /usr/lib and not in the sysroot defined. This doesn't work for me. [ 7%] Building C object CMakeFiles/iio.dir/channel.c.o no checking for xmlParseFile in -lxml. [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C -- Looking for libusb-1.0 : Found long story short: if "/bin" is in your PATH, cmake doesn't work correctly. I made sure xml2 and libxml2 are installed (via sudo apt-get install) but that's not enough. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. "Python_DIR" to a directory containing one of the above files. However I do have libxslt installed, e.g. OnDebian/Ubuntu you can install using apt-get as shown in the below command: Ran into similar issue when trying to install PHP SOAP extension. For a list of important open Already on GitHub? Malicious files should be detected reliably now What to do? I'm hitting other issues now, will post a separate question if I can't work round these. [ 30%] Building C object CMakeFiles/iio.dir/xml.c.o homebrew installs libxml2 as "keg only" which means it is not symlinked to the normal /usr/local/include and /usr/local/lib directories which means nothing can find it without help. I'll play around with my PATH and see if I can get it going. xml.c always uses /usr/include even though I set my own sysroot path. The best answers are voted up and rise to the top, Not the answer you're looking for? libraries make Share Improve this question Follow Why can pkg-config not find gsettings-desktop-schemas? It only takes a minute to sign up. https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/. checking for gcc option to accept ISO C89 none needed [ 15%] Building C object CMakeFiles/iio.dir/context.c.o issues see https://gitlab.gnome.org/GNOME/libxml2/-/issues/507, Powered by Discourse, best viewed with JavaScript enabled, https://download.gnome.org/sources/libxml2/2.11/libxml2-2.11.0.tar.xz, https://gitlab.gnome.org/GNOME/libxml2/-/issues/507. It should be /usr/include/libxml2. simplifying this part of the code base and improving error reporting. -- Detecting C compiler ABI info Using an Ohm Meter to test for bonding of a subpanel. ^ I can build libiio using "make all", but then "make install" fails trying to write to /usr/lib even though I've specified my own sysroot in the cmake line. Checking for 1.8: -I/home/kkarius/anaconda3/include/libxml2 -I/home/kkarius/anaconda3/include You signed in with another tab or window. "Signpost" puzzle from Tatham's collection. compilation terminated. Error installing the stringi package on R 4 on Linux Ubuntu, Having Trouble Downloading Tidyverse in R. What was the actual cockpit layout and crew of the Mi-24A? How can I control PNP and NPN transistors together from one pin? force = TRUE, ^ # Install XML What does "up to" mean in "is first up to launch"? Because configure it self is autogenerated from configure.ac using autotools, one patches configure.ac and can then run autoreconf. Refactoring has begun on some buffering and encoding code with the goal of Asking for help, clarification, or responding to other answers. Minor 9, Patch 4 for 2.9.4 I'm trying to compile the lib https://github.com/bjz/gl-rs. Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? checking for suffix of executables Let me know if you have any further problems. On what basis are pardoning decisions made by presidents or governors when exercising their pardoning power? 2. I'm trying to figure out what needs to be done to make the configure script happy with libxml2 because libxml-2.0 isn't available. If you have specified LIBXML_INCDIR, make certain to also I have added all dependancy described there listed bellow: After adding dependancies i am trying to run bellow commands. [9] LC_ADDRESS=C LC_TELEPHONE=C It seems that R is picking up the libxml2 installation from Anaconda. cmake --sysroot=${PWD}/../../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ -- Looking for stdint.h -- Performing Test HAS_PIPE2 - Success
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configure: error: "libxml not found" 2023